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Conservative and Atypical Ferritins of Sponges.
Kim I Adameyko, Anton V Burakov, Alexander D Finoshin, Kirill V Mikhailov, Oksana I Kravchuk, Olga S Kozlova, Nicolay G Gornostaev, Alexander V Cherkasov, Pavel A Erokhov, Maria I Indeykina, Anna E Bugrova, Alexey S Kononikhin, Andrey V Moiseenko, Olga S Sokolova, Artem N Bonchuk, Irina V Zhegalova, Anton A Georgiev, Victor S Mikhailov, Natalia E Gogoleva, Guzel R Gazizova, Elena I Shagimardanova, Oleg A Gusev, Yulia V Lyupina.
Int J Mol Sci. 2021 Aug 11;22(16):8635. doi: 10.3390/ijms22168635. -
A Synthetic Strong and Constitutive Promoter Derived from the Stellaria media pro-SmAMP1 and pro-SmAMP2 Promoters for Effective Transgene Expression in Plants.
Larisa N Efremova, Svetlana R Strelnikova, Guzel R Gazizova, Elena A Minkina, Roman A Komakhin.
Genes (Basel). 2020 Nov 26;11(12):1407. doi: 10.3390/genes11121407. -
Genome-Wide Atlas of Promoter Expression Reveals Contribution of Transcribed Regulatory Elements to Genetic Control of Disuse-Mediated Atrophy of Skeletal Muscle.
Pintus SS, Akberdin IR, Yevshin I, Makhnovskii P, Tyapkina O, Nigmetzyanov I, Nurullin L, Devyatiyarov R, Shagimardanova E, Popov D, Kolpakov FA, Gusev O, Gazizova GR.
Biology (Basel). 2021 Jun 20;10(6):557. doi: 10.3390/biology10060557. PMID: 34203013; PMCID: PMC8235325. -
Genomic and phenotypic analysis of siderophore-producing Rhodococcus qingshengii strain S10 isolated from an arid weathered serpentine rock environment.
Khilyas IV, Sorokina AV, Markelova MI, Belenikin M, Shafigullina L, Tukhbatova RI, Shagimardanova EI, Blom J, Sharipova MR, Cohen MF.
Arch Microbiol. 2021 Mar;203(2):855-860. doi: 10.1007/s00203-020-02057-w. Epub 2020 Oct 6. PMID: 33025059. -
Complete Genome Sequence of Lactobacillus hilgardii LMG 7934, Carrying the Gene Encoding for the Novel PII-Like Protein PotN.
Zhuravleva DE, Iskhakova ZI, Ozhegov GD, Gogoleva NE, Khusnutdinova DR, Shagimardanova EI, Forchhammer K, Kayumov AR.
Curr Microbiol. 2020 Nov;77(11):3538-3545. doi: 10.1007/s00284-020-02161-6. Epub 2020 Aug 14. PMID: 32803419.
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Bioinformatic Study of Transcriptome Changes in the Mice Lumbar Spinal Cord After the 30-Day Spaceflight and Subsequent 7-Day Readaptation on Earth: New Insights Into Molecular Mechanisms of the Hypogravity Motor Syndrome.
Kuznetsov MS, Lisukov AN, Rizvanov AA, Gusev OA et al.
Front Pharmacol. 2019;10:747. Published 2019 Jul 11. doi:10.3389/fphar.2019.00747 -
Lynch Syndrome Germline Mutations in Breast Cancer: Next Generation Sequencing Case-Control Study of 1,263 Participants.
Nikitin AG, Chudakova DA, Enikeev RFGusev OA, Shagimardanova EI, Shigapova LH et al.
Front Oncol. 2020;10:666. Published 2020 May 29. doi:10.3389/fonc.2020.00666 -
Rational strategy for studying microbiome of the ocular surface of people using hard contact lenses by method of 16S rRNA gene metabarcoding.
Avetisov SE, Abramova ND, Gogoleva NE, Gusev OA et al.
Vestn Oftalmol. 2020;136(3):3-9. doi:10.17116/oftalma20201360313 -
Structure of Neuroglobin from Cold-Water Sponge Halisarca dujardinii
Adameyko KI, Kravchuk OI, Finoshin AD, Gusev OA et al.
Mol Biol (Mosk). 2020;54(3):474-479. doi:10.31857/S0026898420030039 -
Correction: Iron metabolic pathways in the processes of sponge plasticity.
Finoshin AD, Adameyko KI, Mikhailov KV, Gusev OA, Shagimardanova EI et al.
PLoS One. 2020;15(3):e0230634. Published 2020 Mar 12. doi:10.1371/journal.pone.0230634 -
Iron metabolic pathways in the processes of sponge plasticity
Finoshin AD, Adameyko KI, Mikhailov KV, Gusev OA, Shagimardanova EI et al.
PLoS One. 2020;15(2):e0228722. Published 2020 Feb 21. doi:10.1371/journal.pone.0228722 -
Identification of a master transcription factor and a regulatory mechanism for desiccation tolerance in the anhydrobiotic cell line Pv11.
Yamada TG, Hiki Y, Hiroi NF, Gusev OA, Shagimardanova EI et al.
PLoS One. 2020;15(3):e0230218. Published 2020 Mar 19. doi:10.1371/journal.pone.0230218 -
Regulation of Proteins in Human Skeletal Muscle: The Role of Transcription.
Makhnovskii PA, Zgoda VG, Bokov RO, Gusev OA, Shagimardanova EI, Gazizova GR et al.
Sci Rep. 2020;10(1):3514. Published 2020 Feb 26. doi:10.1038/s41598-020-60578-2 -
Comparison of the Microbiota and Inorganic Anion Content in the Saliva of Patients with Gastroesophageal Reflux Disease and Gastroesophageal Reflux Disease-Free Individuals.
Ziganshina EE, Sagitov II, Akhmetova RF, Shagimardanova EI, Gogoleva NE et al.
Biomed Res Int. 2020;2020:2681791. Published 2020 May 13. doi:10.1155/2020/2681791 -
PTPN11 Knockdown Prevents Changes in the Expression of Genes Controlling Cell Cycle, Chemotherapy Resistance, and Oncogene-Induced Senescence in Human Thyroid Cells Overexpressing BRAF V600E Oncogenic Protein.
Putlyaeva LV, Demin DE, Uvarova AN, Shagimardanova EI, Gazizova GR et al.
Biochemistry (Mosc). 2020;85(1):108-118. doi:10.1134/S0006297920010101 -
Transcriptomic data of Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S treated with novobiocin.
Gogoleva NE, Konnova TA, Balkin AS, Plotnikov AO, Gogolev YV.
Data Brief. 2020;29:105297. Published 2020 Feb 17. doi:10.1016/j.dib.2020.105297 -
Dataset for transcriptome analysis of abscisic acid degrading bacterium Novosphingobium sp. P6W.
Gogoleva NE, Konnova TA, Ismailov TT, Balkin AS, Belimov AA, Gogolev YV.
Data Brief. 2019;28:105001. Published 2019 Dec 16. doi:10.1016/j.dib.2019.105001 -
Metagenomic analysis of mycobacterial transrenal DNA in patients with HIV and tuberculosis coinfection.
Sinkov VV, Ogarkov OB, Plotnikov AO, Gogoleva NE, et al.
Infect Genet Evol. 2020;77:104057. doi:10.1016/j.meegid.2019.104057 -
Genetic algorithm-based personalized models of human cardiac action potential.
Smirnov D, Pikunov A, Syunyaev R, Deviatiiarov R, Gusev O, et al.
PLOS ONE 15(5): e0231695. doi.org/10.1371/journal.pone.0231695
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Identification of a novel strong promoter from the anhydrobiotic midge, Polypedilum vanderplanki, with conserved function in various insect cell lines
Miyata, Y., Tokumoto, S., Sogame, Y., Deviatiiarov, R., Okada, J. Cornette, R., Gusev, O., Shagimardanova, E., Sakurai, M., Kikawada, T.
Scientific Reports. Volume 9, Article number: 7004 (2019) -
Contractile activity-specific transcriptome response to acute endurance exercise and training in human skeletal muscle
Daniil V. Popov, Pavel A. Makhnovskii, Elena I. Shagimardanova, Guzel R. Gazizova, Evgeny A. Lysenko, Oleg A. Gusev,and Olga L. Vinogradova
Am J Physiol Endocrinol Metab. 2019 Apr 1;316(4):E605-E614. doi: 10.1152/ajpendo.00449.2018 -
Data on the genome analysis of the probiotic strain Bacillus subtilis GM5
Hadieva, G.F., Lutfullin, M.T., Pudova, D.S., Akosah, Y.A., Gogoleva, N.E., Shagimardanova E.I., Mardanova, A.M., Sharipova, M.R.
Data in Brief. Volume 23, April 2019, Article number: 103643 -
Draft genome sequence and analysis of Klebsiella oxytoca strain NK-1 isolated from ureteral stent
Giliazeva, A.G., Shagimardanova, E.I., Shigapova, L.H., Pudova, D.S., Sharipova, M.R., Mardanova, A.M.
Data in Brief Volume 24, June 2019, Article number: 103853 -
Comparative Genome Analysis of Uropathogenic Morganella morganii Strains
Minnullina L, Pudova D, Shagimardanova E, Shigapova L, Sharipova M and Mardanova A
(2019). Front. Cell. Infect. Microbiol. 9:167. doi: 10.3389/fcimb.2019.00167 -
Heterozygous mutation in fanconi anemia genes associated with hereditary breast cancer
M Gordiev, O Brovkina, L H Shigapova, E Shagimardanova, R F Enikeev, A Nikitin, V Petkau, A Aksarin, E Ovchinnikova, D Sakaeva
Annals of Oncology, Volume 30, Issue Supplement_3, May 2019, mdz095.028, https://doi.org/10.1093/annonc/mdz095.028 -
Bioinformatic Analysis of the Sciatic Nerve Transcriptomes of Mice after 30-Day Spaceflight on Board the Bion-M1 Biosatellite
Kuznetsov M. S., Rezvyakov P. N., Lisyukov A.N., Gusev O. A., Nikolskiy E.E., Islamov R. R.
Russian Journal of Genetics. March 2019, Volume 55, Issue 3, pp 388–392
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Cooption of heat shock regulatory system for anhydrobiosis in the sleeping chironomid Polypedilum vanderplanki
Pavel V. Mazin, Elena Shagimardanova, Olga Kozlova, Alexander Cherkasov, Roman Sutormin, Vita V. Stepanova, Alexey Stupnikov, Maria Logacheva, Aleksey Penin, Yoichiro Sogame, Richard Cornette, Shoko Tokumoto, Yugo Miyata, Takahiro Kikawada, Mikhail S. Gelfand, and Oleg Gusev.
PNAS March 6, 2018. 115 (10) E2477-E2486; published ahead of print February 20, 2018. https://doi.org/10.1073/pnas.1719493115 -
Nucleic Acid Amplification-Based Diagnostics for Pulmonary Diseases: What Is the Current State and Perspectives of Nucleic Acid Amplification Technologies Used in Diagnostics Associated with Pulmonary Diseases?
Oleg Gusev, Yoshihide Hayashizaki, Kengo Usui.
Clinical Relevance of Genetic Factors in Pulmonary Diseases. 13 July 2018. PP 333-344 -
The Antioxidant System in the Anhydrobiotic Midge as an Essential, Adaptive Mechanism for Desiccation Survival
Alexander Nesmelov, Richard Cornette, Oleg Gusev, and Takahiro Kikawada.
Survival Strategies in Extreme Cold and Desiccation. Adaptation Mechanisms and Their Applications. Editors: Iwaya-Inoue, Mari, Sakurai, Minoru, Uemura, Matsuo. 2018. Pages 259-270 -
The Ethnic-Specific Spectrum of Germline Nucleotide Variants in DNA Damage Response and Repair Genes in Hereditary Breast and Ovarian Cancer Patients of Tatar Descent
Olga I. Brovkina, Leila Shigapova, Daria A. Chudakova, Marat G. Gordiev, Rafael F. Enikeev, Maxim O. Druzhkov, Dmitriy S. Khodyrev, Elena I. Shagimardanova, Alexey G. Nikitin and Oleg A. Gusev.
Front. Oncol., 02 October 2023 | https://doi.org/10.3389/fonc.2018.00421 -
240PLandscape of germline mutations in hereditary breast and ovarian cancer (HBOC) patients in Russia revealed by target panel sequencing
E. Shagimardanova, L. H. Shigapova, R. F. Enikeev, M. Druzhkov, A. Nikitin, O. Gusev, M. Gordiev.
Annals of Oncology, Volume 29, Issue suppl_8, 1 October 2018, mdy270.235,https://doi.org/10.1093/annonc/mdy270.235 -
241Lynch syndrome-associated hereditary mutations cause breast and ovarian cancer: Results from Russian Heredetary Oncogenomics project
M. Gordiev, L. H. Shigapova, O. Brovkina, R. F. Enikeev, M. Druzhkov, A. Nikitin, E. Shagimardanova, O. Gusev.
Annals of Oncology, Volume 29, Issue suppl_8, 1 October 2018, mdy270.236,https://doi.org/10.1093/annonc/mdy270.236 -
Involvement of Heat Shock Proteins in Invertebrate Anhydrobiosis
Alexander Nesmelov, Elena Shagimardanova, Takahiro Kikawada, Oleg Gusev.
In book: Heat Shock Proteins and Stress, pp.179-192 -
Transcriptome analysis of the anhydrobiotic cell line Pv11 infers the mechanism of desiccation tolerance and recovery
Takahiro G. Yamada, Yoshitaka Suetsugu, Ruslan Deviatiiarov, Oleg Gusev, Richard Cornette, Alexander Nesmelov, Noriko Hiroi, Takahiro Kikawada & Akira Funahashi.
Scientific Reports. 8, Article number: 17941 (2018) -
Comparison of intestinal bacterial and fungal communities across various xylophagous beetle larvae (Coleoptera: Cerambycidae)
Waleed S. Mohammed, Elvira E. Ziganshina, Elena I. Shagimardanova, Natalia E. Gogoleva & Ayrat M. Ziganshin.
Scientific Reports. Volume 8, Article number: 10073 (2018) -
Integrative Transcription Start Site Analysis and Physiological Phenotyping Reveal Torpor-Specific Expressions in Mouse Skeletal Muscle
Genshiro Sunagawa, Ruslan Deviatiiarov, Kiyomi Ishikawa, Guzel Gazizova, Oleg Gusev, Masayo Takahashi.
Preprint (PDF Available) · August 2018 DOI: 10.1101/374975 -
Fungal, Bacterial, and Archaeal Diversity in the Digestive Tract of Several Beetle Larvae (Coleoptera)
Ziganshina EE, Mohammed WS, Shagimardanova EI, Vankov PY, Gogoleva NE, Ziganshin AM.
Biomed Res Int. 2018 Apr 16;2018:6765438. doi: 10.1155/2018/6765438. eCollection 2018. -
Draft genome sequence of Brevibacterium epidermidis EZ-K02 isolated from nitrocellulose-contaminated wastewater environments
Ziganshina EE, Mohammed WS, Doijad SP, Shagimardanova EI, Gogoleva NE, Ziganshin AM.
Data Brief. 2018 Jan 3;17:119-123. doi: 10.1016/j.dib.2017.12.053. eCollection 2018 Apr.
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An integrated expression atlas of miRNAs and their promoters in human and mouse
Derek de Rie, Imad Abugessaisa, Tanvir Alam, Erik Arner, Peter Arner, Haitham Ashoor, Gaby Åström, Magda Babina, Nicolas Bertin, A Maxwell Burroughs, Ailsa J Carlisle, Carsten O Daub, Michael Detmar, Ruslan Deviatiiarov et al.
Nature Biotechnology, Volume 35, 21 August 2017, Pages 872–878 doi:10.1038/nbt.3947 -
Planetary protection challenges in space exploration missions and ways of their resolution with account of Russian exobiology experiments
OI Orlov, ND Novikova, NA Polikarpov, MA Levinskikh, EA Deshevaya, M Sugimoto, VR Alekseev, T Okuda, Oleg Gusev, VN Sychev Ruslan Deviatiiarov et al.
REACH-Reviews in Human Space Exploration, Volume 6, 1 June 2017, Pages 25-33 -
Systematic analysis of transcription start sites in avian development
Marina Lizio, Ruslan Deviatiiarov, Hiroki Nagai, Laura Galan, Erik Arner, Masayoshi Itoh, Timo Lassmann, Takeya Kasukawa, Akira Hasegawa, Marian A Ros, Yoshihide Hayashizaki, Piero Carninci, Alistair RR Forrest, Hideya Kawaji, Oleg Gusev, Guojun Sheng.
PLoS Biology, Volume 15, Issue 9, 5 September 2017, Pages e2002887 -
201PCDK12: New breast and ovarian cancer predisposition gene in Tatar population?
E Shagimardanova, O Brovkina, M Gordiev, R Enikeev, L Shigapova, D Khodyrev, Oleg Gusev, A Kedrova, V Kosiy, A Nikitin.
Annals of Oncology, Volume 7, Issue suppl_5, 1 September 2017, mdx362.051 https://doi.org/10.1093/annonc/mdx362.051 -
Determination of EGFR gene somatic mutations in tissues and plasma of patients with non-small cell lung cancer
OI Brovkina, MG Gordiev, AN Toropovskiy, DS Khodyrev, RF Enikeev, Oleg Gusev, LH Shigapova, AG Nikitin.
Biochemistry (Moscow), Supplement Series B: Biomedical Chemistry, Volume 11, Issue 3, 1 Jule 2017, Pages 279-285 -
Towards water-free biobanks: long-term dry-preservation at room temperature of desiccation-sensitive enzyme luciferase in air-dried insect cells
Shingo Kikuta, Shunsuke J. Watanabe, Ryoichi Sato, Oleg Gusev, Alexander Nesmelov, Yoichiro Sogame, Richard Cornette & Takahiro Kikawada.
Scientific Reports. Volume 7, Article number: 6540 (2017) -
A new anhydrobiotic midge from Malawi, Polypedilum pembai sp. n.(Diptera: Chironomidae), closely related to the desiccation tolerant midge, Polypedilum vanderplanki Hinton
Richard Cornette, Nao Yamamoto, Masaru Yamamoto, Tadashi Kobayashi, Ninel A Petrova, Oleg Gusev, Sachiko Shimura, Takahiro Kikawada, Dylo Pemba, Takashi Okuda.
Systematic Entomology, Volume 42, Issue 4, 1 October 2017, Pages 814-825 -
The complete mitochondrial genome of an anhydrobiotic midge Polypedilum vanderplanki (Chironomidae, Diptera)
Deviatiiarov R., Oleg Gusev, Kikawada T.
Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis, Volume 28, Issue 2, 4 March 2017, Pages 218-220 -
Serum cytokine profiles differentiating hemorrhagic fever with renal syndrome and hantavirus pulmonary syndrome
Khaiboullina S.F., Levis S., Morzunov S.P., Martynova E.V., Anokhin V.A., Oleg Gusev, St Jeor S.C., Lombardi V.C., Rizvanov A.A.
Frontiers in Immunology, Volume 8, Issue MAY, 18 May 2017, page 567 -
Genetic background of enhanced radioresistance in an anhydrobiotic insect: transcriptional response to ionizing radiations and desiccation
Ryabova A., Mukae K., Cherkasov A., Cornette R., Shagimardanova E., Sakashita T., Okuda T., Kikawada T., Gusev O.
Extremophiles, Volume 21, Issue 1, 1 January 2017, Pages 109-120 -
In Vitro Recombinant Expression of Novel Protective Protein Highly Accumulated in Dry State in an Anhydrobiotic Insect
Yuka H.-K. Oleg Gusev , Shagimardanova E., Kikawada T.
BioNanoScience, Volume 7, Issue 2, 1 June 2017, Pages 263-264 -
Semaphorins Are Likely to Be Involved in the Control of Hibernation
Gazizova G., Kozlova O., Tyapkina O., Nurullin L., Shagimardanova E.
BioNanoScience, Volume 7, Issue 1, 1 March 2017, Pages 73-74
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Genomic analysis of mouse lumbar spinal cord after 30-day space flight on biosatellite Bion-M1
R. R. Islamov, O. A. Gusev, A. Tanabe, M. Terada, O. V. Tyapkina, K. A. Petrov, A. A. Rizvanov, I. B. Kozlovskaya, E. E. Nikolskiy, A. I. Grigorjev.
Doklady Biochemistry and Biophysics, September 2014, Volume 458, Issue 1, pp 177-178 -
Genome-wide expression analysis of reactive oxygen species gene network in Mizuna plants grown in long-term spaceflight
Sugimoto M, Oono Y, Gusev O., Matsumoto T, Yazawa T, Levinskikh MA, Sychev VN, Bingham GE, Wheeler R, Hummerick M.
BMC Plant Biol. 2014 Jan 6;14(1):4. -
Comparative genome sequencing reveals genomic signature of extreme desiccation tolerance in the anhydrobiotic midge
Gusev O., Suetsugu Y., Cornette R.,Kawashima T., Logacheva M., Kondrashov A.,Penin A., Hatanaka R., Kikuta Sh., Shimura S., Katayose Y.,Matsumoto T., Shagimardanova E., Alexeev D.,Govorun V., Wisecaver J., Mikheyev A., Koyanagi R., Nishiyama T., Shigenobu Sh., Shibata T., Galygina V., Hasebe M., Okuda T., Satoh N. and Kikawada T.
Nature Communications, 5, 4784; doi:10.1038/ncomms5784 -
Karyotypical characteristics of two allopatric African populations of anhydrobiotic Polypedilum Kieffer, 1912 (Diptera, Chironomidae) originating from Nigeria and Malawi
Ninel A. Petrova, Richard Cornette, Sachiko Shimura, Oleg A. Gusev, Dylo Pemba, Takahiro Kikawada, Sergey Y. Zhirov, Takashi Okuda.
Comparative Cytogenetics 9(2): 173-188 (11 May 2023) doi: 10.3897/CompCytogen.v9i2.9104 -
Diversity of the expression profiles of late embryogenesis abundant (LEA) protein encoding genes in the anhydrobiotic midge Polypedilum vanderplanki
Hatanaka R., Gusev O., Cornette R., Shimura S., Kikuta S., Okada J., Okuda T., Kikawada T.
Planta. 2015 Mar 31. [Epub ahead of print] DOI: 10.1007/s00425-015-2284-6 -
Study of the Effects of the Outer Space Environment on Dormant Forms of microorganisms, fungi and plants in the “Expose-R” experiment
Novikova N., Deshevaya E., Gusev O., Levinskikh M., Polikarpov N., Poddubko S., Sychev V.
Int. Journal of Astrobiology. 14 (1): 137–142 (2015) -
MnSOD downregulation induced by extremely low 0.1 mGy single and fractionated X-rays and microgravity treatment in human neuroblastoma cell line, NB-1
H. Indo, T.Tomiyoshi, Sh. Suenaga, K. Tomita, H. Suzuki, D. Masuda, M. Terada, N. Ishioka, Gusev O., R. Cornette, T. Okuda, Ch. Mukai, H. Majima.
Journal of Clinical Biochemistry and Nutrition. – 2015. – v. 57-2. – pp 98-104. -
Gene Expression Profiling of H9c2 Myoblast Differentiation towards a Cardiac-Like Phenotype
Ana F. Branco, Susana P. Pereira, Susana Gonzalez, Oleg Gusev, Albert A. Rizvanov, Paulo J. Oliveira.
PLoS One. 2015 Jun 29;10(6):e0129303. doi: 10.1371/journal.pone.0129303. eCollection 2015. -
Chironomid midges (Diptera, chironomidae) show extremely small genome sizes
Cornette R., Gusev O., Nakahara Y., Shimura S., Kikawada T., Okuda T.
Zoological Science 32(3):248-254. 2015 doi: http://dx.doi.org/10.2108/zs140166 -
Full-genome study of gene expression in lumbar spinal cord of mice after 30-day space flight on Bion-M1 biosatellite
R.R. Islamova, О.А. Gusev, A. Tanabe, M. Terada, O.V. Tyapkina, K.A. Petrov, А.А. Rizvanov, I.B. Kozlovskaya, E.E. Nikolskiy, A.I. Grigorjev.
Acta Astronautica Volume 122, May–June 2016, Pages 231–236, doi:http://dx.doi.org/10.1016/j.actaastro.2016.01.026 -
Recent Advances and Future Direction in Lyophilisation and Desiccation of Mesenchymal Stem Cells
Akalabya Bissoyi, Awanish Kumar, Albert A. Rizvanov, Alexander Nesmelov, Oleg Gusev, Pradeep Kumar Patra and Arindam Bit.
Stem Cells International Volume 2016 (2016), Article ID 3604203, 9 pages doi: http://dx.doi.org/10.1155/2016/3604203